Basic Information
VIS ID
TVIS44022696
Fusion event
HTLV-1-LOC100506178 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p15.3
Reference genome
GRCh37/hg19
Start
22603880/22564261 (Hg38)
End
22603880/22564261 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
LOC100506178
Nearest miRNA
hsa-mir-1183/Upstream/1093115; hsa-mir-10399/Downstream/3385658;
Nearest TSS
ENST00000635602/Upstream/924; ENST00000439823/Downstream/25444;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/14367, chr7-CpG: 48/Downstream/100943
Upstream sequence
AAGCCATCTCCCAGCGGGAGTGAAAGGACTGTGGGGACAGGGCATCAATGTCTGCCCAAGGCAAAATAGGGCGAACAGTAGCCTGCCTGTGGCACCCTCC
Downstream sequence
CCACCTCTCTTCTAGAGCAGTAACCTTTCATTTTCTCAGCCTCTGCATGGGAAGTCTCATTTAGGCTCCTTAGTTCACCCACACCTTGCTACGACAAACA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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