Basic Information
VIS ID
TVIS44022714
Fusion event
HTLV-1-chr7 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p22.3
Reference genome
GRCh37/hg19
Start
42907/42907 (Hg38)
End
42907/42907 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA7B
Nearest miRNA
hsa-mir-10399/Downstream/980026;
Nearest TSS
ENST00000635602/Upstream/18593; ENST00000478759/Downstream/34131;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/11465, chr7-CpG: 20/Downstream/39417
Nearby gene
LOC105375112(-4968) ;
Upstream sequence
CAGACACCAGTAAAAACAGAGAAAAGGTGGGGACATAAAGGCCCAGACGTAAGAGTGGGCAAGGGTGCCCTCTGGTTCATTTCACTCTGCAGTCGACTCC
Downstream sequence
CAAGGTGAACCTAGTGAATTCTGCCTCAGAAGCCCTGGTTTCCTTGTCTCTGACACTGAATCCACAGTAGCCATGATCCACGTTTATTGGATCACCAGTA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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