Basic Information
VIS ID
TVIS44022715
Fusion event
HTLV-1-chr7 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p14.1
Reference genome
GRCh37/hg19
Start
42983567/42943968 (Hg38)
End
42983567/42943968 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1183/Upstream/6024536; hsa-mir-10399/Downstream/206927;
Nearest TSS
ENST00000635602/Upstream/8925; ENST00000471527/Downstream/19375;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/11268, chr7-CpG: 124/Downstream/168453
Nearby gene
MRPL32(+6114) ;
Upstream sequence
atgaatggtttagcaccatcttcttggtactgtcctcatgatagtaagtgagttctcatgaaatttggtcactttaaagtgtgtggcacctccctcctcg
Downstream sequence
ctctcttgctcttgctttagccatgggatgtgcctgctcctcctttgccttccactatgactggaagcttcctgaggcctcaccagaagcagatgctgct
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate