Basic Information
VIS ID
TVIS44022718
Fusion event
HTLV-1-PKD1L1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p12.3
Reference genome
GRCh37/hg19
Start
47948537/47908940 (Hg38)
End
47948537/47908940 (Hg38)
Orient
+
Location type
Intronic
Target gene
PKD1L1
miRNAs that regulate target gene
hsa-mir-1-3p
Nearest miRNA
hsa-mir-1183/Upstream/3027140; hsa-mir-10399/Downstream/9046845;
Nearest TSS
ENST00000635602/Upstream/81474; ENST00000461741/Downstream/39551;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/326811, chr7-CpG: 59/Downstream/70278
Upstream sequence
tgccctctctttcttgtcttgggacctctgtcattgtcattgggaccatgtcatttccatgtgaatagcctggcctagtctgctgaaggatgagatacac
Downstream sequence
atgactgagtctccccatggccccagccaagggtcagtctcctccaggagactggctgcagatctgtgagtgagcccctctaagaccagctcagacctga
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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