Basic Information
VIS ID
TVIS44022721
Fusion event
HTLV-1-COBL integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p12.1
Reference genome
GRCh37/hg19
Start
51191654/51123957 (Hg38)
End
51191654/51123957 (Hg38)
Orient
+
Location type
Intronic
Target gene
COBL
Nearest miRNA
hsa-mir-1183/Upstream/6242157; hsa-mir-10399/Downstream/5831828;
Nearest TSS
ENST00000635602/Upstream/88002; ENST00000414409/Downstream/66986;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/330016, chr7-CpG: 148/Downstream/191657
Upstream sequence
CTGCAGAGCCACAGTCACCCTGCACCCCCCTCTGCCAAGTGTTACACAACTCTCTTGGATTGAATCAGCATCAATGCATGATGGCTCCATGCAGAAAAGA
Downstream sequence
CATCAGACAGGCCCATATtctgttgcttactggcagtagtagcagccctgggacctcactttccctttgtaaacctcagtgtcctcattggtaaaatgaa
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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