Basic Information
VIS ID
TVIS44022752
Fusion event
HTLV-1-LOC105375369 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q21.11
Reference genome
GRCh37/hg19
Start
79293137/79663821 (Hg38)
End
79293137/79663821 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105375369
Nearest miRNA
hsa-mir-10525/Upstream/3748552; hsa-mir-10399/Downstream/12540194;
Nearest TSS
ENST00000635602/Upstream/210247; ENST00000442586/Downstream/470134;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/209287, chr7-CpG: 135/Downstream/470656
Nearby gene
MIR548M(No orient, 107435)
Upstream sequence
tatgcggcgttatttctgagggctctgttctgttccactggtctatatctctgttttggtaacagtaccatgctgttttggttactgtagccttgtagta
Downstream sequence
tagtttgaagtcagatagcgtgatgcctccagctttgttcttttggcttaggactgacttggtgatgcaggctcttttttggttccatatgaactttaaa
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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