Proximate region of VIS (GRCh38)VISEnhancerEnhancer/PromoterPromoterGene102498937101686543102124907102060255102062713102052281102053787102073757102075235102070479102071673102063536102064519102065533102065682102092593102092742102064626102064697102092740
Basic Information
VIS ID
TVIS44022784
Fusion event
HTLV-1-NCALD integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q22.3
Reference genome
End
103104968/102092740 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-12123/Upstream/1389716; hsa-mir-10400/Downstream/32692;
Upstream sequence
ttttcatgctcctcccacattgaccttccctttgtactattccttcttcctggaatgcctggaattactagaatgctatttacccacacatccccttcaa
Downstream sequence
ctacttatttcctacctatccatcaaatcccaactcatccatggagtcaacagccttccttagctctacaattaagacagttccatttttcgcacctctc
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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