Basic Information
VIS ID
TVIS44022787
Fusion event
HTLV-1-AZIN1-AS1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
103989296/102977068 (Hg38)
End
103989296/102977068 (Hg38)
Orient
+
Location type
ncRNA_intronic
Fragile sites / regions
FRA8A
Target gene
AZIN1-AS1
Nearest miRNA
hsa-mir-12123/Upstream/851553; hsa-mir-10400/Downstream/177546;
Nearest TSS
ENST00000518652/Upstream/35445; ENST00000517983/Downstream/1717;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/112212, chr8-CpG: 19/Downstream/44042
Upstream sequence
TCTTTCCAAAGAAGGCAGTAAGACAGTCTGCCCTTTCCTTGCCCAGACTGGAAAACATGAAGTCCTTGTACCTTCTTGCCCCTCCCTGAGCTCAGCGTAC
Downstream sequence
AGCCCATACCGAACAGGGTAGAAGGAGTACCAGCAGCAACCCCGATGCTGGGATGTTGGGCAATAGTGGAGCACGATTAGTATGCCCATGCCTCACTCAC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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