Basic Information
VIS ID
TVIS44022831
Fusion event
HTLV-1-chr8 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
p22
Reference genome
GRCh37/hg19
Start
16837143/16979634 (Hg38)
End
16837143/16979634 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-124-1/Upstream/2126124; hsa-mir-10400/Downstream/701944;
Nearest TSS
ENST00000518652/Upstream/64590; ENST00000522235/Downstream/22206;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/1438856, chr8-CpG: 46/Downstream/21901
Nearby gene
FGF20(-13191) ;
Upstream sequence
gaagcagtctggctacagtggcttttcgaagctgcggagggctcggcccagtctgaacttcccagaggctttgtttacactgtaaggggaaaaccaccta
Downstream sequence
ctcaagcctcagtaatggcagacgcccctccccccaccaagctcgagcatcccaaatcaacttcagacagctgtgttggcagtgaaaatttcaagcccgt
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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