Basic Information
VIS ID
TVIS44022838
Fusion event
HTLV-1-LOC100507156 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
p21.3
Reference genome
GRCh37/hg19
Start
23206253/23348740 (Hg38)
End
23206253/23348740 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
LOC100507156
Nearest miRNA
hsa-mir-124-1/Upstream/1103703; hsa-mir-10400/Downstream/1605056;
Nearest TSS
ENST00000518652/Upstream/7564; ENST00000521021/Downstream/22386;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/60247, chr8-CpG: 120/Downstream/54189
Upstream sequence
gccgaggcgggtggatcacgaggccaggagatcgagaccatccctgctaccacggtgaaaccccgtctctactaaaaatacaaaaatttagctgggcatg
Downstream sequence
gtggcgggcacctgtagtcccagctactcaggaggctgaggcaggagaatggcatgaacccgggaggcggagcttgcagtgagctgagatcacgacactg
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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