Basic Information
VIS ID
TVIS44022850
Fusion event
HTLV-1-chr8 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
p12
Reference genome
GRCh37/hg19
Start
29659614/29802098 (Hg38)
End
29659614/29802098 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-124-1/Upstream/1296916; hsa-mir-10400/Downstream/155174;
Nearest TSS
ENST00000518652/Upstream/53748; ENST00000522967/Downstream/26406;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/448814, chr8-CpG: 53/Downstream/225157
Nearby gene
LINC02099(-3606) ;
Upstream sequence
AAAGTGCATTTAATTCTTACCTTTGAGAGGATTGTGGGAAAGGTACTAAATCCTATGGTTCCAAGGGTGATCTTATACATTTTAGATAGCAAATAGCATT
Downstream sequence
TAAGGTAGAGCACAAGCCATTTTACATTCTAGAATCAAACCCCATGCCAGAATGTCAGTCCTTGACAGTGGTAGCAAGTACCTCAAATGTGATATGtata
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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