Basic Information
VIS ID
TVIS44022851
Fusion event
HTLV-1-MIR548O2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
p12
Reference genome
GRCh37/hg19
Start
30071027/30213511 (Hg38)
End
30071027/30213511 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
MIR548O2
Nearest miRNA
hsa-mir-124-1/Upstream/256163; hsa-mir-10400/Downstream/11057537;
Nearest TSS
ENST00000518652/Upstream/16107; ENST00000521816/Downstream/170968;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/56667, chr8-CpG: 144/Downstream/170389
Upstream sequence
GCGAGTGTCTGTGACGTCATTCTGGCCTACACTACAGCTTAGGTGTGGACCCCAAAGACTCCGAGTTACAATCAGGAATCCCACTCTGGTCTCTTCACTG
Downstream sequence
TCCTCTCCCCTCTGTGCTCCGTCTCATCCTGGAGgctgctctgccggtctgaagctttccccgcttccttccacctggctgcttgtccctgtcttccatg
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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