Basic Information
VIS ID
TVIS44022862
Fusion event
HTLV-1-C8orf86 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
p11.22
Reference genome
GRCh37/hg19
Start
38374425/38516907 (Hg38)
End
38374425/38516907 (Hg38)
Orient
-
Location type
Intronic
Target gene
C8orf86
Nearest miRNA
hsa-mir-124-1/Upstream/8559559; hsa-mir-10400/Downstream/2754141;
Nearest TSS
ENST00000518652/Upstream/48073; ENST00000522474/Downstream/11750;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/48051, chr8-CpG: 52/Downstream/133874
Upstream sequence
AGCTTGAACAACTGTGCGTGGCAGCCTTATCCTGGCTGTGCCCAGCAGAGAGCTTTCCGGAACATCTACACTGCAGTCTTCCTGGCTGAGGGCACACATG
Downstream sequence
TGCCACACTCTCATTGCTCATGCTCCCTGCCCACCCCTGCCCTCCAATGCCAGGGCATGTATGCCTCTGGCAGCTTGTACCTTTGCCTTAACCCGAATTC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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