Basic Information
VIS ID
TVIS44022863
Fusion event
HTLV-1-ADAM2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
p11.22
Reference genome
GRCh37/hg19
Start
39653257/39795738 (Hg38)
End
39653257/39795738 (Hg38)
Orient
-
Location type
Intronic
Target gene
ADAM2
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-124-1/Upstream/9838390; hsa-mir-10400/Downstream/1475310;
Nearest TSS
ENST00000518652/Upstream/21036; ENST00000522840/Downstream/42471;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/272724, chr8-CpG: 20/Downstream/1101907
Upstream sequence
aaaatccataaaagcaagctgtaccccaaccaccatgggcacaagtcatcaggacctcctaagactgtgttaagggcatgttcttaaccttggcaaaaca
Downstream sequence
aactttctaaattgattggtacctatctcagatactttgtggttcacaaagtttatatacttttggcatcttgtttttatatggtataaagaagctaaaa
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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