Basic Information
VIS ID
TVIS44022876
Fusion event
HTLV-1-LOC105375825 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q11.21
Reference genome
GRCh37/hg19
Start
49726599/48814040 (Hg38)
End
49726599/48814040 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105375825
Nearest miRNA
hsa-mir-124-1/Upstream/5917765; hsa-mir-10400/Downstream/12900748;
Nearest TSS
ENST00000518652/Upstream/78729; ENST00000522267/Downstream/107389;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/78611, chr8-CpG: 18/Downstream/20796
Nearby gene
EFCAB1(-78729) ;
Upstream sequence
ACTCAGCCAGTTTCACTCACTCTTGTGTAGGCTATGGCTTGCAGCCATGTCAAGCTGTCCATCACTTTTCTGTGAATGTTCACAGGTGGAAATTGAGATT
Downstream sequence
TGTCTGCATTTGGGAGAAATTCATCAGATCCATCAAGGGGCCAGGAGCAAGTAGGGGAGGTGAGGATCTGATATCCCCTGTTTTTATTAGGGAATGTGGT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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