Basic Information
VIS ID
TVIS44022877
Fusion event
HTLV-1-chr8 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q11.21
Reference genome
GRCh37/hg19
Start
49744827/48832268 (Hg38)
End
49744827/48832268 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-124-1/Upstream/5935993; hsa-mir-10400/Downstream/12882520;
Nearest TSS
ENST00000518652/Upstream/96957; ENST00000522267/Downstream/89161;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/96839, chr8-CpG: 18/Downstream/2568
Nearby gene
SNAI2(-85412) ;
Upstream sequence
agaccatttgaggagctgctggtactgggatggggtggaaaccatgacttgtggccttccttgctgggtggggactgagacctggcactgtgctactcct
Downstream sequence
cttgggttctggacacacttgccttcccctcctcccagggtcctcctggggtcacctcaagtgccatgctgggttcacagttgtgcttggtggcagaagc
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate