Basic Information
VIS ID
TVIS44022879
Fusion event
HTLV-1-chr8 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q11.21
Reference genome
GRCh37/hg19
Start
51881460/50968900 (Hg38)
End
51881460/50968900 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-124-1/Upstream/8072625; hsa-mir-10400/Downstream/10745888;
Nearest TSS
ENST00000518652/Upstream/325059; ENST00000521294/Downstream/288788;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/1058600, chr8-CpG: 98/Downstream/439702
Nearby gene
SNTG1(+174782) ;
Upstream sequence
gagaaggcaataagaatgtatgacatatatgatttgatccttaagtattgaattaaggcaatgtagcagataaatagtcaatatgatggatgcttagaaa
Downstream sequence
tttccagatttggtagaacatgcattctgagccacaCAAATAAAAATTAGTCATTTCATTGACATAGTATTGTCAAATTACATTCAGAACAACAACaaca
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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