Basic Information
VIS ID
TVIS44022889
Fusion event
HTLV-1-CLVS1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q12.3
Reference genome
GRCh37/hg19
Start
62241929/61329370 (Hg38)
End
62241929/61329370 (Hg38)
Orient
-
Location type
Intronic
Target gene
CLVS1
miRNAs that regulate target gene
hsa-mir-215-5p ; hsa-mir-192-5p
Nearest miRNA
hsa-mir-124-1/Upstream/18433095; hsa-mir-10400/Downstream/385418;
Nearest TSS
ENST00000518652/Upstream/28301; ENST00000518426/Downstream/40976;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/189498, chr8-CpG: 102/Downstream/384627
Upstream sequence
gtatcttctagcatttacttgcatattttgaaatagcatgcacatactgctatttgttgattattttagttttagctattagttaataatcctactatga
Downstream sequence
aagTTTGATCCCACCTTGAACATAAATTTCCCCTCTTTCCAGCCTTTCCAAAGAGTTAAATCAACctggtattcaatagatcagcagtgtgactacagct
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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