Basic Information
VIS ID
TVIS44022890
Fusion event
HTLV-1-chr8 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q12.3
Reference genome
GRCh37/hg19
Start
63014185/62101626 (Hg38)
End
63014185/62101626 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-124-1/Upstream/386767; hsa-mir-10400/Downstream/2277523;
Nearest TSS
ENST00000518652/Upstream/211787; ENST00000524201/Downstream/146965;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/386674, chr8-CpG: 37/Downstream/42762
Nearby gene
FLJ39630(+147316) ;
Upstream sequence
gttctaagttgttacttatgaaaaacacagataaatctttctcatctcttagaagctttctatttttgtatataataggagcatctttgggatagggata
Downstream sequence
tccatactcagataatcactcacgaagccatttggaattttacatgctaaatgagaaggacccacatgacatatggagttttgaaagattagagacacaa
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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