VISDB Viral Integration Site DataBase

VIS ID

TVIS44022945

Fusion event

HTLV-1-UGCG integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr9

Cytoband

q31.3

Reference genome

Start

End

114660277/111897997 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-375 ; hsa-mir-633 ; hsa-mir-8079 ; hsa-mir-8062 ; hsa-mir-1245a ; hsa-mir-510-5p ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac ; hsa-mir-27b-3p ; hsa-mir-27a-3p ; hsa-mir-513a-5p ; hsa-mir-5591-3p ; hsa-mir-324-5p ; hsa-mir-586 ; hsa-mir-660-5p ; hsa-mir-328-3p ; hsa-mir-223-5p ; hsa-mir-7155-3p ; hsa-mir-3136-3p ; hsa-mir-3919 ; hsa-mir-511-3p ; hsa-mir-8066 ; hsa-mir-4482-3p ; hsa-mir-7159-3p ; hsa-mir-4284 ; hsa-mir-8057 ; hsa-mir-219a-2-3p ; hsa-mir-4797-3p ; hsa-mir-219b-3p ; hsa-mir-545-5p ; hsa-mir-1252-3p ; hsa-mir-3646 ; hsa-mir-4796-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-3609 ; hsa-mir-548ah-5p ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-24-3p ; hsa-mir-6504-3p ; hsa-mir-3120-3p ; hsa-mir-216a-3p ; hsa-mir-128-3p ; hsa-mir-3681-3p ; hsa-mir-335-3p ; hsa-mir-5096 ; hsa-mir-5683 ; hsa-mir-576-3p ; hsa-mir-1273h-3p ; hsa-mir-2467-3p ; hsa-mir-3678-3p ; hsa-mir-4684-3p ; hsa-mir-4797-5p ; hsa-mir-6501-3p ; hsa-mir-6773-3p ; hsa-mir-744-3p ; hsa-mir-8068

Nearest miRNA

hsa-let-7a-1/Upstream/626783; hsa-mir-12126/Downstream/34103;

Nearest TSS

Nearest CpG islands

None/Target, chr9-CpG: 64/Upstream/504, chr9-CpG: 90/Downstream/276877

Upstream sequence

TTTTTCAGTTCCTCGTTTTATTGTTTTATGTAGATTTGTACTCTCCCCGTGCCGGCCACATCTTTTCATTtttgtttaacaaatacttcttgaggcctac

Downstream sequence

tagataccattcactgttattggccaggggacatggtggtgagcaggacagaattcctgtcctcatgagtcttacattctagaaggaaggagcagataaa