Basic Information
VIS ID
TVIS44022957
Fusion event
HTLV-1-LOC107987129 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q33.3
Reference genome
GRCh37/hg19
Start
129480025/126717746 (Hg38)
End
129480025/126717746 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC107987129
Nearest miRNA
hsa-let-7a-1/Upstream/2023948; hsa-mir-12126/Downstream/972941;
Nearest TSS
ENST00000422679/Upstream/103277; ENST00000450858/Downstream/87260;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/11689, chr9-CpG: 97/Downstream/4816
Nearby gene
LMX1B(+16714) ;
Upstream sequence
tatttatttatttatttttgagtcagagtctcattctgtcacccaggcgggagtgcagtggcacaatctctgcttactgcaacctctgcctccggggttc
Downstream sequence
aagcaattctcctgcctcagcctcctgagtaactgggatcacaggcacgcaccaccacacccagctaatttgtttgtatttttagtacagatggggtttc
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate