Basic Information
VIS ID
TVIS44022959
Fusion event
HTLV-1-TTC16 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q34.11
Reference genome
End
130489654/127727375 (Hg38)
Orient
-
Location type
Exonic
Target gene
Nearest miRNA
hsa-let-7a-1/Upstream/36580; hsa-mir-12126/Downstream/58458;
Nearest CpG islands
Upstream sequence
TAAACGGCACGAGTTGGAGCGCCAGAAGGCCTTGGCCCTGCAGCACTCATGGAAGCAGGGGGAGCCTTTGATTGCGACCTCCGAGGAGCTGAAGGCCACC
Downstream sequence
CCTGAGATTCCGCAGGTAAAACCGGGAAGCTCAGAGGGAGAGGCTGAGGCCCCTgaggaggaggaagaaaaggagaaggagaaaaaagaggTAAGTGGAG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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