Basic Information
VIS ID
TVIS44022962
Fusion event
HTLV-1-chr9 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q34.11
Reference genome
GRCh37/hg19
Start
132051585/129289306 (Hg38)
End
132051585/129289306 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7a-1/Upstream/896592; hsa-mir-12126/Downstream/580299;
Nearest TSS
ENST00000422679/Upstream/6848; ENST00000316786/Downstream/31710;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/30547, chr9-CpG: 49/Downstream/31286
Nearby gene
LOC101929331(No orient, 3587)
Upstream sequence
TCCCTCTCTTGCTCTGCCTTCTCCAGGAGGCCTTTGTGAACGTTCTGTGGACATGGGCTCTCCATGAGTCTCTCAGCTCGTGTTTGCTTCCCCCTGAGCC
Downstream sequence
AGGGTAGAGGCTCCTGCACGCTGAGTCCTTATCTGTGTTGCGCCGACCCCAGTGCCTAGGCAGGGCCTGGGCCCCAGGGCCCCTCTGGATCTGTTGAAAG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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