Basic Information
VIS ID
TVIS44022966
Fusion event
HTLV-1-chr9 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q34.13
Reference genome
GRCh37/hg19
Start
134638197/131762810 (Hg38)
End
134638197/131762810 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7a-1/Upstream/1136447; hsa-mir-126/Downstream/1182897;
Nearest TSS
ENST00000422679/Upstream/22736; ENST00000444708/Downstream/53382;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/47, chr9-CpG: 34/Downstream/60944
Nearby gene
RAPGEF1(-22866) ;
Upstream sequence
CGGCGGACCTCGCTGGGAACTGGGTGGGTCGTGGGGAGCCCACGTTCCCCTCGCCTCACACCCTGCTGTGGTGGACTGAGCCCGGGGAAGGAAATCCAGA
Downstream sequence
AACCActtggcttctgtcactcacaagctctgggacgttgggaaaatgatttggcctctctgtgcctcagtttctgcacctgtaaaatggcaacaccgta
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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