Basic Information
VIS ID
TVIS44023024
Fusion event
HTLV-1-LOC105376076 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q21.12
Reference genome
GRCh37/hg19
Start
72389354/69774438 (Hg38)
End
72389354/69774438 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105376076
Nearest miRNA
hsa-mir-101-2/Upstream/28540603; hsa-let-7a-1/Downstream/1035537;
Nearest TSS
ENST00000422679/Upstream/14479; ENST00000480564/Downstream/46229;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/14251, chr9-CpG: 52/Downstream/269482
Nearby gene
PTAR1(-14478) ;
Upstream sequence
TGAAGTCATTGTCAGATTCATTTTTGTAACCCAACAACATGGTACAGTTCCTTATATGAGGCAGATATTAAGTATATATGTATTGAATGAAAAAAAGAGA
Downstream sequence
CAATGTATTTACTTTTTTATGGTTCATGTTATGAGTAGCAAAGAATTAATGTAATGAGAATCATAATTCTTAAAATTTGTCATCAATTTTCACAATTACC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate