Basic Information
VIS ID
TVIS44023041
Fusion event
HTLV-1-chr9 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q21.33
Reference genome
GRCh37/hg19
Start
89269605/86654690 (Hg38)
End
89269605/86654690 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-101-2/Upstream/2684833; hsa-let-7a-1/Downstream/2091146;
Nearest TSS
ENST00000422679/Upstream/22543; ENST00000415801/Downstream/292499;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/299701, chr9-CpG: 205/Downstream/290979
Nearby gene
GAS1(-289672) ;
Nearest cancer related gene
GAS1(TSG, -289672) ;
Upstream sequence
ttgttacgtacatcaatttctcttcaatttcacagccattaccctggttcagctccaaaaaggactatgaaaatagcctctcaacaggtctacctggtgc
Downstream sequence
ttctctatcatctttaacaatacaaatgaggataaaaataagaatgtttttacagtgcttggtctgccagccactgttctaagtgtattacatatattaa
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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