Basic Information
VIS ID
TVIS44023053
Fusion event
HTLV-1-chr9 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q22.32
Reference genome
GRCh37/hg19
Start
98545078/95782796 (Hg38)
End
98545078/95782796 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7a-1/Upstream/696702; hsa-mir-12126/Downstream/1580758;
Nearest TSS
ENST00000422679/Upstream/10473; ENST00000426805/Downstream/92274;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/30349, chr9-CpG: 32/Downstream/1572
Nearby gene
LINC00476(-23292) ;
Upstream sequence
GACAGGGAGTGACTTAAAAAAAACAAGGAGACAGACATTTATGGAAATGGTGTTTACTCAAGGCTGAAGAGAAGGTTTCTGTCTAGCCTAAAAGTGATGT
Downstream sequence
CACACAAATTAAGAAGGGAAACCCTGAGAGGACGCATTGGGcagtgtttcccaaagtgtgttcatagaacacaagtctcagaagatgcttggtgacagag
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate