Basic Information
VIS ID
TVIS44023054
Fusion event
HTLV-1-PTCSC2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q22.33
Reference genome
GRCh37/hg19
Start
100498674/97736392 (Hg38)
End
100498674/97736392 (Hg38)
Orient
-
Location type
Intronic
Target gene
PTCSC2
Nearest miRNA
hsa-let-7a-1/Upstream/372711; hsa-mir-12126/Downstream/492757;
Nearest TSS
ENST00000422679/Upstream/39035; ENST00000562653/Downstream/6816;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/38899, chr9-CpG: 45/Downstream/4879
Nearby gene
XPA(-38983) ;
Upstream sequence
TAGACCTGAGCTAGCCCATGGCCTCCTCCAGCCTACACTGGTTTTGGAGGAATGCTCTATTGTTAGAGGGAAGGGCAGGTACTCTACCCTAACTTCCTGA
Downstream sequence
CCACAGCATTTTCCACAGGAGCTCCCACAAGAAGTTTTAATGAGGTAAGCACAAGCTCTCACCAATTCCAAGCAAAAAGGTGGGGCTCTCTGCACCTCTC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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