Basic Information
VIS ID
TVIS44023091
Fusion event
HTLV-1-chr10 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q26.3
Reference genome
GRCh37/hg19
Start
132490297/130692033 (Hg38)
End
132490297/130692033 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA10D ; FRA10A ; FRA10B
Nearest miRNA
hsa-mir-107/Upstream/848659; hsa-mir-202/Downstream/270555;
Nearest TSS
ENST00000439456/Upstream/252966; ENST00000436942/Downstream/403185;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/124316, chr10-CpG: 36/Downstream/93423
Nearby gene
MIR378C(-270554) ;
Upstream sequence
GATTATCAGCACAGCCAGGAAAGGCTCCAGCTTCATCTGTTTGACAGATAAGAGATTCTGTTGGACAGGTTTCCACTGTGATAGACAGAAGCAATATCTT
Downstream sequence
GAGCTACAGGAGGGCACAGCCATTTAAGTCTTTATATAGGCGATGCTTGGGAAGCAAAACGCTTTATGCCTCAAAAGATACATGGTGAATATTTACCCAT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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