Basic Information
VIS ID
TVIS44023127
Fusion event
HTLV-1-LINC00841 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q11.21
Reference genome
GRCh37/hg19
Start
44406318/43910870 (Hg38)
End
44406318/43910870 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA10G
Target gene
LINC00841
Nearest miRNA
hsa-mir-1265/Upstream/913189; hsa-mir-107/Downstream/1253144;
Nearest TSS
ENST00000439456/Upstream/51459; ENST00000446107/Downstream/1456;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/182292, chr10-CpG: 24/Downstream/94663
Upstream sequence
AGCAAGATTAAAAGCAACAACAGTGACAAAAACGCCTGTTTTGGAAAGCTGTGCCTGGCAGGGGCTGGTCAGGACTTTGGCGCGCTGGGCCCATGGGCTG
Downstream sequence
CGCTGATTTGGAGCCAGCTCTGGATCAGCAGGGTGAGCGGCTGGCCTAGGGCGGTGGATCTGAAACCTAAGGATGAGATCCCAGGGGCTTCAGTGCCAGG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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