Proximate region of VIS (GRCh38)VISEnhancerEnhancer/PromoterPromoterGene6117002860869438610014406101627561026420609771926098063561000057610020006099833460999918609743036097551260975903609760526098118360981332609969236099707260989483609895926098968360989752609896036098963261019733
Basic Information
VIS ID
TVIS44023148
Fusion event
HTLV-1-LINC00845 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
62779491/61019733 (Hg38)
End
62779491/61019733 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA10C
Target gene
LINC00845
Nearest miRNA
hsa-mir-1265/Upstream/3715174; hsa-mir-107/Downstream/2353224;
Nearest TSS
ENST00000439456/Upstream/3458; ENST00000389640/Downstream/394767;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/17896, chr10-CpG: 40/Downstream/433004
Upstream sequence
caaaaaaaaaaaaaaTTATTGTTATGGCATCCCTGAAAAATGACATATTACCTCTTCCTCTCCAGATTACTTCATTTCTAATAATTATGAAGatgactac
Downstream sequence
catttattgaataagttctttgttcctatcattgtgttaagtgcttcaattacatcatctaattctcccaaaaactctattagggcaatagcacaattat
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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