Basic Information
VIS ID
TVIS44023175
Fusion event
HTLV-1-chr10 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q23.2
Reference genome
GRCh37/hg19
Start
88693512/86933755 (Hg38)
End
88693512/86933755 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA10D
Nearest miRNA
hsa-mir-1265/Upstream/668967; hsa-mir-107/Downstream/570126;
Nearest TSS
ENST00000439456/Upstream/94816; ENST00000465679/Downstream/10816;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/176295, chr10-CpG: 108/Downstream/8803
Nearby gene
MMRN2(-1786) ;
Upstream sequence
acctcaggtgatccacccgcctcggcctcccaaagtgctgagattacaggcatgagccaccAATTTGGGGATTTTAAAATATTTTTTCCACATCAGGTTT
Downstream sequence
GCAGGTACCACCGTGTGCTCCGTCCATTGTGGTGTTTTGGGTGCCACAGTGAGGGTGCTGACCGCTGGTCTGGGTAACGGGGGGTCTGCTTGCAGGACAG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate