Basic Information
VIS ID
TVIS44023178
Fusion event
HTLV-1-chr10 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q23.33
Reference genome
GRCh37/hg19
Start
96895161/95135404 (Hg38)
End
96895161/95135404 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA10D
Nearest miRNA
hsa-mir-107/Upstream/5542577; hsa-mir-1287/Downstream/928911;
Nearest TSS
ENST00000439456/Upstream/65907; ENST00000404473/Downstream/33021;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/589268, chr10-CpG: 63/Downstream/48034
Nearby gene
ACSM6(No orient, 58796)
Upstream sequence
atattgttatgctggtattatttacctttgaatttatttctatatatatgtagtaacatttactgttatacaactttcagagaattccaagatttatgtt
Downstream sequence
aatgtggggttttattctgttgtctatattttattctcaaacttctctatgtgtcttgtttttatttctatttagacatggggtctccctatgttaccca
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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