Basic Information
VIS ID
TVIS44023192
Fusion event
HTLV-1-RDX integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
110143839/110273114 (Hg38)
End
110143839/110273114 (Hg38)
Orient
+
Location type
Intronic
Target gene
RDX
miRNAs that regulate target gene
hsa-mir-31-5p ; hsa-mir-409-3p ; hsa-let-7b-5p ; hsa-mir-331-3p ; hsa-let-7e-5p ; hsa-mir-196a-5p ; hsa-mir-196b-5p ; hsa-mir-4768-5p ; hsa-mir-6833-3p ; hsa-mir-6873-3p ; hsa-mir-7110-3p ; hsa-mir-4646-3p ; hsa-mir-4433b-5p ; hsa-mir-6826-3p ; hsa-mir-921 ; hsa-mir-6755-3p ; hsa-mir-1294 ; hsa-mir-6073 ; hsa-mir-202-3p ; hsa-mir-6795-3p ; hsa-mir-7852-3p ; hsa-mir-3174 ; hsa-mir-1244 ; hsa-mir-5683 ; hsa-mir-98-5p ; hsa-mir-4458 ; hsa-let-7i-5p ; hsa-let-7g-5p ; hsa-let-7a-5p ; hsa-let-7d-5p ; hsa-let-7c-5p ; hsa-mir-4500 ; hsa-let-7f-5p ; hsa-mir-6887-3p ; hsa-mir-3941 ; hsa-mir-6895-3p ; hsa-mir-6817-3p ; hsa-mir-6758-3p ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-4797-5p ; hsa-mir-1251-3p ; hsa-mir-1178-3p ; hsa-mir-3157-5p ; hsa-mir-3934-3p ; hsa-mir-4691-3p
Nearest miRNA
hsa-mir-10392/Upstream/6423134; hsa-let-7a-2/Downstream/1074643;
Nearest TSS
ENST00000527297/Upstream/8290; ENST00000526703/Downstream/15277;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/179163, chr11-CpG: 147/Downstream/22725
Upstream sequence
tcaggagtttgagaccagcctggggaacacagcaagactatgaaaaatttaaaaattagttgggtgtggtggcatgtgcctgttatttccaggaagctga
Downstream sequence
gatgggaggatcacttgagcctaggagtttgagggctgccgtgagctatgattgtactactgaacttcagcctgcacaacagagcaagaccctgcctcca
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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