Basic Information
VIS ID
TVIS44023202
Fusion event
HTLV-1-CCDC84 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
118882685/119011975 (Hg38)
End
118882685/119011975 (Hg38)
Orient
-
Location type
Exonic
Fragile sites / regions
FRA11B
Target gene
CCDC84
Nearest miRNA
hsa-mir-10392/Upstream/101188; hsa-let-7a-2/Downstream/300975;
Nearest TSS
ENST00000527297/Upstream/16; ENST00000533787/Downstream/2091;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/13481, chr11-CpG: 91/Downstream/6193
Upstream sequence
GGCATGGCCTAGGCAGGCTCTTAAGCATCCCAGACACATTTATTTTTCCTGAATCAAACTCAGCCTCAGGCAGTGCCAGACCCAGAAGAGGGCTCTTCAG
Downstream sequence
CACCTAGAAGCTGGAAAGGGATGAACAGGTAAGACTATTAGGGAATCTCTTGTTGGGAATTTGACATCTTAGAACATTCTGCAACCTTTTGCCTGGGAAA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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