Basic Information
VIS ID
TVIS44023216
Fusion event
HTLV-1-LOC101929427 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
126537420/126667525 (Hg38)
End
126537420/126667525 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
LOC101929427
Nearest miRNA
hsa-let-7a-2/Upstream/3286013; hsa-mir-3167/Downstream/320933;
Nearest TSS
ENST00000527297/Upstream/11439; ENST00000532988/Downstream/273134;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/250550, chr11-CpG: 27/Downstream/332805
Upstream sequence
AATGGAGTTTTGCAGAAGGCAATTGCCTAGAAAATAGTGGGTTTTTAAGGATGAACTTTTGACTCCCAATGCGAGGTGAAGGGAAGATCGGGGGAGAATA
Downstream sequence
GGGAGAGAAGGGCTGTCTTTTCTGTTTTCTCTGGGGCACCATGGCTATAATAACTTCTACTTTGCTGTGATGGACTCAGCAATCAATTTATTCTACGATC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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