Basic Information
VIS ID
TVIS44023270
Fusion event
HTLV-1-chr11 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p12
Reference genome
GRCh37/hg19
Start
42747396/42725846 (Hg38)
End
42747396/42725846 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1343/Upstream/6715642; hsa-let-7a-2/Downstream/833810;
Nearest TSS
ENST00000527297/Upstream/472134; ENST00000530300/Downstream/586117;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/6215379, chr11-CpG: 49/Downstream/586043
Nearby gene
LINC02740(-472156) ;
Upstream sequence
agcaggaagagataagcctggaaaaggaagcaaggaccagacaaggcaggctttgcagagtctgagaatatggcttCACTAAGAAAATAATGAAACAATC
Downstream sequence
CCATCTGTCATCAAACCAAACCAAGTAAGATAGGTCAATGCCTCTTTACCTCTTAAACCCAAAACACAAGGGAAGACAACTCTAATATAGTCCAAAACAG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate