VISDB Viral Integration Site DataBase

VIS ID

TVIS44023273

Fusion event

HTLV-1-HSD17B12 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr11

Cytoband

p11.2

Reference genome

Start

End

43648153/43626603 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-874-3p ; hsa-mir-191-5p ; hsa-mir-381-3p ; hsa-mir-6811-5p ; hsa-mir-6511b-5p ; hsa-mir-4771 ; hsa-mir-1205 ; hsa-mir-1972 ; hsa-mir-4494 ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-509-5p ; hsa-mir-509-3-5p ; hsa-mir-4418 ; hsa-mir-3714 ; hsa-mir-548an ; hsa-mir-633 ; hsa-mir-30e-3p ; hsa-mir-30d-3p ; hsa-mir-30a-3p ; hsa-mir-510-3p ; hsa-mir-222-5p ; hsa-mir-142-3p ; hsa-mir-494-3p ; hsa-mir-29a-5p ; hsa-mir-3129-5p ; hsa-mir-199b-3p ; hsa-mir-199a-3p ; hsa-mir-936 ; hsa-mir-205-3p ; hsa-mir-4280 ; hsa-mir-3163 ; hsa-mir-3680-3p ; hsa-mir-557 ; hsa-mir-507 ; hsa-mir-450b-5p ; hsa-mir-527 ; hsa-mir-518a-5p ; hsa-mir-548aw ; hsa-mir-1288-5p ; hsa-mir-382-3p ; hsa-mir-4284 ; hsa-mir-4772-3p ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-1304-3p ; hsa-mir-6741-3p ; hsa-mir-4726-3p ; hsa-mir-6764-5p ; hsa-mir-1915-3p ; hsa-mir-6840-3p ; hsa-mir-5698 ; hsa-mir-744-3p ; hsa-mir-4423-5p ; hsa-mir-6501-5p ; hsa-mir-675-5p ; hsa-mir-4466 ; hsa-mir-367-5p ; hsa-mir-1267 ; hsa-mir-103b ; hsa-mir-7705 ; hsa-mir-7703 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-542-3p ; hsa-mir-5186 ; hsa-mir-4252 ; hsa-mir-4793-3p ; hsa-mir-766-3p ; hsa-mir-6849-3p ; hsa-mir-598-5p ; hsa-mir-1273g-3p ; hsa-mir-508-5p ; hsa-mir-1273a ; hsa-mir-6501-3p ; hsa-mir-887-5p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-7977 ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-24-3p ; hsa-mir-383-3p ; hsa-mir-3614-5p ; hsa-mir-1227-3p ; hsa-mir-3160-3p ; hsa-mir-1247-3p ; hsa-mir-340-3p ; hsa-mir-3689d ; hsa-mir-4537 ; hsa-mir-455-3p ; hsa-mir-4684-5p ; hsa-mir-548c-3p ; hsa-mir-6134 ; hsa-mir-6499-3p ; hsa-mir-6516-5p ; hsa-mir-6771-3p ; hsa-mir-6807-5p ; hsa-mir-6827-3p ; hsa-mir-6851-5p ; hsa-mir-6880-5p ; hsa-mir-7847-3p ; hsa-mir-129-5p ; hsa-mir-2113 ; hsa-mir-371b-5p ; hsa-mir-373-5p ; hsa-mir-4474-3p ; hsa-mir-4698 ; hsa-mir-5010-3p ; hsa-mir-5692a ; hsa-mir-616-5p ; hsa-mir-7108-5p ; hsa-mir-8063

Nearest miRNA

hsa-mir-129-2/Upstream/45120; hsa-let-7a-2/Downstream/2065101;

Nearest TSS

Nearest CpG islands

None/Target, chr11-CpG: 30/Upstream/44938, chr11-CpG: 59/Downstream/53863

Nearby gene

MIR129-2(+45120) ;

Upstream sequence

AAATGTTTTAGTAGCAAGAAACAGAAACTATATGGCACATTAATTTTTTTTGCATTTTTTTTAATAGATGCTAAAACAATGGTTTCAGGAAAAGGAGTAT

Downstream sequence

TTTTGTTTTATCTGAGACTTATAGTACCTTAAGTAATGTTTTCAAAGGAAAATAATAATACTTTTTACAAACTTTCCATTTCAACCCTTATGCAAATGAA