Basic Information
VIS ID
TVIS44023275
Fusion event
HTLV-1-chr11 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
45662795/45641245 (Hg38)
End
45662795/45641245 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-129-2/Upstream/2059762; hsa-let-7a-2/Downstream/50459;
Nearest TSS
ENST00000527297/Upstream/58720; ENST00000525563/Downstream/8389;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/285553, chr11-CpG: 115/Downstream/8402
Nearby gene
CHST1(-6444) ;
Upstream sequence
actccatctcaaaaaaaaagaagggaatgtaattaaagtgttttaaggtattaagtgtgtttcccaataaaaggataaagatattgattaactttacact
Downstream sequence
cggataaactgagaaaggaatctgcagtttctaaggttgcctactaaaggaatagaaacagatatataatattctaattagtggagggaagaaaatataa
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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