Basic Information
VIS ID
TVIS44023277
Fusion event
HTLV-1-chr11 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p11.12
Reference genome
GRCh37/hg19
Start
49832132/49810580 (Hg38)
End
49832132/49810580 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-129-2/Upstream/1713722; hsa-let-7a-2/Downstream/6933293;
Nearest TSS
ENST00000527297/Upstream/601910; ENST00000555099/Downstream/141811;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/251853, chr11-CpG: 25/Downstream/7148
Nearby gene
LOC440040(+163) ;
Upstream sequence
GAAATATATTCTCTGTTTTTTTTTTCTTTATTTCTCACTACCACTGAGTGAAATAATAGATGACAGACATGTCTGAATGGAGTTAAAATCAGTGGAAGAG
Downstream sequence
AGTCAGGATATTTTGCTTCATGCAAAAACTTGGAGTGAAGTCTTAATGATAACTGGGAAATGTTGTTTTTCTTTCTCTTTATATAACTGTATTGCACTTA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate