Basic Information
VIS ID
TVIS44023319
Fusion event
HTLV-1-LOC107984361 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q14.2
Reference genome
GRCh37/hg19
Start
87088747/87377705 (Hg38)
End
87088747/87377705 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA11F
Target gene
LOC107984361
Nearest miRNA
hsa-mir-10392/Upstream/1099307; hsa-let-7a-2/Downstream/798797;
Nearest TSS
ENST00000527297/Upstream/58638; ENST00000532849/Downstream/341706;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/339654, chr11-CpG: 45/Downstream/797370
Nearby gene
TMEM135(+48871) ;
Upstream sequence
ctcagccccttgaaggagggagcagatgagcaagggagtgtggaattgggctggccgctctgggtgctgacataggaacaagctccatgcagggcacgtg
Downstream sequence
gccagaccaggtgtatcacttgagaggaacacagtggcgcccaggcaagggtgcccatgaccctgaaaccccagagggggtgttagtgtgctaattagct
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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