Basic Information
VIS ID
TVIS44023367
Fusion event
HTLV-1-LOC101929974 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q24.33
Reference genome
GRCh37/hg19
Start
132010412/131525867 (Hg38)
End
132010412/131525867 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA12E
Target gene
LOC101929974
Nearest miRNA
hsa-let-7i/Upstream/3231689; hsa-mir-6763/Downstream/1056130;
Nearest TSS
ENST00000382841/Upstream/32916; ENST00000508145/Downstream/97336;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/32569, chr12-CpG: 22/Downstream/34693
Nearby gene
LINC02370(+158312) ;
Upstream sequence
taagaatcagatttcaggtgaaaacctggatttctggctttgcttgaaaattcagaaacctgacagcaccgagcctgtaAGGGGCGGAACGAACCCAGCA
Downstream sequence
GCGGCGGCCGCTGTCCTAGGTCAGGTGGGCTGCGGGTTTGCGTGCCCCCAGCACATACCGCCATTGCCTCCCTGGCCCTGTGGGCCTGCCGGCCGCTGAC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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