VISDB Viral Integration Site DataBase

VIS ID

TVIS44023388

Fusion event

HTLV-1-RESF1 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr12

Cytoband

p11.21

Reference genome

Start

End

32139923/31986989 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-21-5p ; hsa-mir-23a-3p ; hsa-mir-27a-3p ; hsa-mir-181a-5p ; hsa-mir-181b-5p ; hsa-mir-181c-5p ; hsa-mir-27b-3p ; hsa-mir-181d-5p ; hsa-mir-6516-5p ; hsa-mir-6807-5p ; hsa-mir-4763-3p ; hsa-mir-1207-5p ; hsa-mir-650 ; hsa-mir-3612 ; hsa-mir-6499-3p ; hsa-mir-6722-3p ; hsa-mir-1909-3p ; hsa-mir-1827 ; hsa-mir-6840-3p ; hsa-mir-665 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-4695-5p ; hsa-mir-5011-3p ; hsa-mir-4522 ; hsa-mir-6721-5p ; hsa-mir-3919 ; hsa-mir-7109-3p ; hsa-mir-6855-5p ; hsa-mir-3170 ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-193b-5p ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-7155-5p ; hsa-mir-512-3p ; hsa-mir-4438 ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-6778-3p ; hsa-mir-150-5p ; hsa-mir-186-3p ; hsa-mir-500b-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-619-5p ; hsa-mir-3685 ; hsa-mir-155-3p ; hsa-mir-7162-5p ; hsa-mir-516b-3p ; hsa-mir-516a-3p ; hsa-mir-4252 ; hsa-mir-6889-3p ; hsa-mir-6504-3p ; hsa-mir-4266 ; hsa-mir-383-3p ; hsa-mir-4779 ; hsa-mir-627-3p ; hsa-mir-6832-3p ; hsa-mir-3145-5p ; hsa-mir-4725-5p ; hsa-mir-5699-3p ; hsa-mir-4421 ; hsa-mir-339-5p ; hsa-mir-759 ; hsa-mir-548o-3p ; hsa-mir-1323 ; hsa-mir-5586-3p ; hsa-mir-10b-5p ; hsa-mir-10a-5p ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-7977 ; hsa-mir-1268b ; hsa-mir-1268a ; hsa-mir-585-3p ; hsa-mir-6787-5p ; hsa-mir-663a ; hsa-mir-1908-5p ; hsa-mir-566 ; hsa-mir-4767 ; hsa-mir-6720-3p ; hsa-mir-4486 ; hsa-mir-518c-5p ; hsa-mir-6499-5p ; hsa-mir-5690 ; hsa-mir-514a-5p ; hsa-mir-4714-5p ; hsa-mir-4258 ; hsa-mir-6872-3p ; hsa-mir-1260b ; hsa-mir-1260a ; hsa-mir-365b-5p ; hsa-mir-365a-5p ; hsa-mir-8052 ; hsa-mir-3199 ; hsa-mir-532-3p ; hsa-mir-4740-3p ; hsa-mir-1224-3p ; hsa-mir-764 ; hsa-mir-552-3p ; hsa-mir-3664-3p ; hsa-mir-510-5p ; hsa-mir-106a-3p ; hsa-mir-1227-3p ; hsa-mir-1247-3p ; hsa-mir-1273h-5p ; hsa-mir-149-3p ; hsa-mir-1910-3p ; hsa-mir-2114-3p ; hsa-mir-2467-3p ; hsa-mir-25-5p ; hsa-mir-30b-3p ; hsa-mir-3192-5p ; hsa-mir-3689a-3p ; hsa-mir-3689b-3p ; hsa-mir-3689c ; hsa-mir-4257 ; hsa-mir-4293 ; hsa-mir-4426 ; hsa-mir-4459 ; hsa-mir-455-3p ; hsa-mir-4647 ; hsa-mir-4662b ; hsa-mir-4684-3p ; hsa-mir-4728-5p ; hsa-mir-550b-2-5p ; hsa-mir-610 ; hsa-mir-6511a-5p ; hsa-mir-658 ; hsa-mir-661 ; hsa-mir-6779-5p ; hsa-mir-6780a-5p ; hsa-mir-6785-5p ; hsa-mir-6799-5p ; hsa-mir-6823-3p ; hsa-mir-6883-5p ; hsa-mir-7106-5p

Nearest miRNA

hsa-mir-1244-3/Upstream/6112910; hsa-let-7i/Downstream/10336711;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/27090, chr12-CpG: 92/Downstream/119326

Upstream sequence

TCATTTGGATCCTTGGAATTTGAGGTGGGGATATAATGGGAACATTGGAAGTGGGTGGGGGCAATGTAGTTTTCTATCTCATGTGTCCTTTAATATCTGG

Downstream sequence

AGATGTATTAACCTCTTCAGTTCATGTGAGGGGAACATAATTACATAGTAAAGATAAACTCATTTTTTAATTGAGGTAAGCATTTCAAATAGAAATCATT