Basic Information
VIS ID
TVIS44023412
Fusion event
HTLV-1-chr12 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q14.2
Reference genome
GRCh37/hg19
Start
63837607/63443827 (Hg38)
End
63837607/63443827 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7i/Upstream/840058; hsa-mir-10527/Downstream/379836;
Nearest TSS
ENST00000382841/Upstream/83790; ENST00000536219/Downstream/125642;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/292640, chr12-CpG: 97/Downstream/224229
Nearby gene
DPY19L2(-115086) ;
Upstream sequence
ATTATCTTTCTTTTAAATTTAGATGGATAATTAAAAATGTTTTTAATTCAAAGTTCCAAGCCTGAAATCCAGATATGTCATATCATGTACTTGCTTCTTG
Downstream sequence
AAGATGAACTCAATAGTTGGTGGATAGAATCCGCACTCTAACAAAACAGCAAACCACAAAAACAGTTGTCTCCATGAAGAAGCCAGTAACTTTGCATTTT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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