Basic Information
VIS ID
TVIS44023449
Fusion event
HTLV-1-BIVM-ERCC5 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q33.1
Reference genome
GRCh37/hg19
Start
103517098/102864748 (Hg38)
End
103517098/102864748 (Hg38)
Orient
+
Location type
Intronic
Target gene
BIVM-ERCC5
Nearest miRNA
hsa-mir-1297/Upstream/818744; hsa-mir-1267/Downstream/4666423;
Nearest TSS
ENST00000623511/Upstream/30; ENST00000481099/Downstream/1195;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/18335, chr13-CpG: 29/Downstream/3628312
Upstream sequence
gccctggtcctggaaccagccatttcaccagggagctctggttcctttcagtggagcatggggtttagacaccacaagctggatgtgagtgtgcttatgg
Downstream sequence
atcctgaggtataactgtctcaggccttttcagcaacagtgccaggaagtatatttatgtatacatatacatgcacacacacatctatatttatttctat
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate