Basic Information
VIS ID
TVIS44023465
Fusion event
HTLV-1-LOC105370102 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q12.11
Reference genome
GRCh37/hg19
Start
20876204/20302065 (Hg38)
End
20876204/20302065 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105370102
Nearest miRNA
hsa-mir-1267/Downstream/131713;
Nearest TSS
ENST00000623511/Upstream/69670; ENST00000389373/Downstream/137839;
Nearest CpG islands
chr13-CpG: 52/Target, None/Upstream, None/Downstream
Nearby gene
GJB6(-69670) ;
Upstream sequence
CTCGGCCTCCCGCTGCACTTCTCCTGGGCTTCCGCGCTTCCCCGCTGCCGAGACCTTTCCCCAGCCGTTCCTCACTCATCCCTTCACCTCTGTCGCGCCC
Downstream sequence
TAGGGTCTCGGGGCCTTACCTGACTCCCACCCTTCCCCTGAGCCCTCCGGCCCCTCCATCCTGTCTCCTGCTTCCCGCCTCTGCACAGCACTTAGCGCCG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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