Basic Information
VIS ID
TVIS44023472
Fusion event
HTLV-1-ANKRD20A19P integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q12.12
Reference genome
GRCh37/hg19
Start
24520554/23946415 (Hg38)
End
24520554/23946415 (Hg38)
Orient
-
Location type
ncRNA_exonic
Target gene
ANKRD20A19P
Nearest miRNA
hsa-mir-4499/Upstream/3512569; hsa-mir-1267/Downstream/216001;
Nearest TSS
ENST00000623511/Upstream/43760; ENST00000439928/Downstream/33285;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/42501, chr13-CpG: 28/Downstream/33122
Upstream sequence
ATGCCCAGGTGGGAACTGGGCTCCACAGCACAGCTCAGCTGTGGCTGCAAACCGTGTGTCCAGCCCAGAGCCAGGCCATCCAACTCCCACTCCCCTCTCG
Downstream sequence
CCGACCAATGCTGGCTCCTCCATTCCTTCACCAGGGTCTTGGGGCCTTGGGACATCTTTGGGACCTCTGCTCTCCCCAATTCCTCCCCCTGCAGCTCCAG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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