Basic Information
VIS ID
TVIS44023475
Fusion event
HTLV-1-chr13 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q12.2
Reference genome
GRCh37/hg19
Start
28370076/27795939 (Hg38)
End
28370076/27795939 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-2276/Upstream/3633435; hsa-mir-1267/Downstream/11868095;
Nearest TSS
ENST00000623511/Upstream/3296; ENST00000381033/Downstream/121359;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/1571, chr13-CpG: 19/Downstream/1433
Nearby gene
GSX1(+1987) ;
Upstream sequence
GTCTTTTCCAGCAGGAAAGACGGTCCACCTGAGGTTGCTTAACATTTTTGAAGCTCATTTCCTCCCCCCCACAAaacggctttattgagctattcacatt
Downstream sequence
agcatccagttcattcattcaaagtgtgcaattccacaacttttagtatattcacagaattgtgcaaccatcgacacaatcttatttaaaaacatttttg
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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