VISDB Viral Integration Site DataBase

VIS ID

TVIS44023497

Fusion event

HTLV-1-LINC00598 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr13

Cytoband

q14.11

Reference genome

Start

End

41010220/40436083 (Hg38)

Orient

+

Location type

ncRNA_intronic

Target gene

miRNAs that regulate target gene

hsa-mir-578 ; hsa-mir-6807-5p ; hsa-mir-526b-5p ; hsa-mir-298 ; hsa-mir-5002-3p ; hsa-mir-203a-3p ; hsa-mir-3158-5p ; hsa-mir-4307 ; hsa-mir-5680 ; hsa-mir-509-5p ; hsa-mir-509-3-5p ; hsa-mir-4418 ; hsa-mir-33a-3p ; hsa-mir-506-5p ; hsa-mir-6834-5p ; hsa-mir-6133 ; hsa-mir-6130 ; hsa-mir-6129 ; hsa-mir-6127 ; hsa-mir-4510 ; hsa-mir-4419a ; hsa-mir-6875-5p ; hsa-mir-3126-5p ; hsa-mir-873-5p ; hsa-mir-5584-5p ; hsa-mir-6876-5p ; hsa-mir-4476 ; hsa-mir-6776-3p ; hsa-mir-497-3p ; hsa-mir-450b-5p ; hsa-mir-527 ; hsa-mir-518a-5p ; hsa-mir-548aw ; hsa-mir-5087 ; hsa-mir-1468-3p ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-3613-3p ; hsa-mir-942-3p ; hsa-mir-4802-3p ; hsa-mir-6768-3p ; hsa-mir-7156-3p ; hsa-mir-96-3p ; hsa-mir-8084 ; hsa-mir-186-5p ; hsa-mir-3591-5p ; hsa-mir-539-3p ; hsa-mir-485-3p ; hsa-mir-142-3p ; hsa-mir-4673 ; hsa-mir-4645-5p ; hsa-mir-664a-3p ; hsa-mir-6074 ; hsa-mir-4255 ; hsa-mir-4446-5p ; hsa-mir-5006-3p ; hsa-mir-4755-5p ; hsa-mir-4279 ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-642a-5p ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-4469 ; hsa-mir-6832-3p ; hsa-mir-4667-3p ; hsa-mir-1470 ; hsa-mir-6865-3p ; hsa-mir-670-3p ; hsa-mir-6881-3p ; hsa-mir-942-5p ; hsa-mir-767-3p ; hsa-mir-4772-3p ; hsa-mir-4518 ; hsa-mir-1266-5p ; hsa-mir-3664-3p ; hsa-mir-1304-3p ; hsa-mir-5193 ; hsa-mir-6890-3p ; hsa-mir-665 ; hsa-mir-887-5p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-7160-5p ; hsa-mir-4722-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-1827 ; hsa-mir-302a-5p ; hsa-mir-4649-3p ; hsa-mir-4768-3p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-890 ; hsa-mir-6771-3p ; hsa-mir-629-3p ; hsa-mir-6749-3p ; hsa-mir-130b-5p ; hsa-mir-2276-5p ; hsa-mir-6892-3p ; hsa-mir-6782-3p ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-6844 ; hsa-mir-4796-5p ; hsa-mir-1248 ; hsa-mir-1237-3p ; hsa-mir-6507-3p ; hsa-mir-6738-3p ; hsa-mir-4727-5p ; hsa-mir-155-3p ; hsa-mir-6852-3p ; hsa-mir-3909 ; hsa-mir-4284 ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-6741-3p ; hsa-mir-6880-3p ; hsa-mir-4485-5p ; hsa-mir-1178-3p ; hsa-mir-6728-3p ; hsa-mir-6513-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-7977 ; hsa-mir-4736 ; hsa-mir-383-3p ; hsa-mir-6765-3p ; hsa-mir-3622b-3p ; hsa-mir-3622a-3p ; hsa-mir-5089-5p ; hsa-mir-5001-3p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-4312 ; hsa-mir-4632-3p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-212-5p ; hsa-mir-186-3p ; hsa-mir-3934-5p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-6504-3p ; hsa-mir-512-3p ; hsa-mir-552-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-6728-5p ; hsa-mir-6878-3p ; hsa-mir-5187-5p ; hsa-mir-6744-3p ; hsa-mir-4757-5p ; hsa-mir-6744-5p ; hsa-mir-6778-3p ; hsa-mir-4707-3p ; hsa-mir-150-5p ; hsa-let-7e-3p ; hsa-let-7d-3p ; hsa-mir-6735-3p ; hsa-mir-3140-3p ; hsa-mir-3922-3p ; hsa-mir-3176 ; hsa-mir-3190-5p ; hsa-mir-3126-3p ; hsa-mir-335-3p ; hsa-mir-3682-5p ; hsa-mir-138-2-3p

Nearest miRNA

hsa-mir-2276/Upstream/771948; hsa-mir-1267/Downstream/291733;

Nearest TSS

Nearest CpG islands

None/Target, chr13-CpG: 551/Upstream/263524, chr13-CpG: 21/Downstream/99269

Upstream sequence

aaAAGTCTCCTCAATCCATAAGGCCTGTGCCCACCTGGCATACAGGTGTGAAAGAGGTAGCTGGGGCTGAGAGAACTCCACAGAGCCTTTATGAAAGGCG

Downstream sequence

GTGAGGGACTGCAGAGACCCCGTGAAGACAAGAGAGCAGAAACCAAAGATGAGCTTGGAGTGAGACTCGCTGGACGCACACAGCGGCACAAAAGGGACAG