Basic Information
VIS ID
TVIS44023525
Fusion event
HTLV-1-LINC00355 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q21.31
Reference genome
GRCh37/hg19
Start
64586898/64012765 (Hg38)
End
64586898/64012765 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA13B
Target gene
LINC00355
Nearest miRNA
hsa-mir-1297/Upstream/2812885; hsa-mir-1267/Downstream/1953565;
Nearest TSS
ENST00000623511/Upstream/264766; ENST00000437777/Downstream/63246;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/168219, chr13-CpG: 92/Downstream/3217611
Nearby gene
LOC102723968(No orient, 168640)
Upstream sequence
tttgctgctcacatttttccaccattgaccatgggtagcacttttacttagcccttacatcccttcgacatgcactcatcattgttttgtagttgttcct
Downstream sequence
gctgtcactatttattttagtgtctgctacaagatctttatgtttattttctatattatcttgtatattttctgttcttgtcctataatcaaccatgtat
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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